If you print your organization information on checks and direct deposit stubs there are now separate options so you can choose to print on one stub and not the other.

In the Print on Pay Stubs box on the on the General tab in Payroll Module Preferences, you can select the Organization address on check stubs and/or the Organization address on direct deposit stubs check boxes.

If you use preprinted checks, be sure the Organization address on check stubs check box is unchecked before your print.